Media
Videos
ISMB 2021
Identifying Universal cancer transcriptome patterns by deep learning interpretation
Mathieu Quesnel-Vallieres, ISMB 2021
LSV-Seq: Novel Targeted Sequencing Method To Measure Alt. Splicing (Flash Talk)
Kevin Yang, ISMB 2021
Alternative Splicing Based Classification of Cancer Subtypes (Flash Talk)
David Wang, ISMB 2021
Collaborative RNA Seminar , Oct 2020
Splicing quantification from RNASeq: How to get the signal out of the noise?
Yoseph Barash, RNA Seminar 2020
ISMB 2020
RBP-Pokedex: Prediction of RBP knockdown effect via DNN experiment modeling
Anupama Jha, ISMB 2020
Splicing variations contribute to the functional dysregulation of genes in acute myeloid leukemia.
Osvaldo D. Rivera, ISMB 2020
CHESSBOARD: A Model for Detecting Splicing Signals in Heterogenous RNA Datasets
David Wang, ISMB 2020
MOCCASIN: A method for correcting known and unknown confounders in RNA-Seq-based splicing analysis
Caleb Matthew Radens, ISMB 2020
ISMB ECCB 2019
Integrative analysis of UTRs uncovers RNA G-Quadruplexes as constrained regulatory features
David Lee, ISMB ECCB 2019
Workshops 2017
Building a New View of Transcriptome Variations
Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates
Workshop: Splicing analysis with MAJIQ/VOILA, May 2017
Workshop: Splicing analysis with MAJIQ/VOILA - Part 1 - May 2017
Workshop: Splicing analysis with MAJIQ/VOILA - Part 2- May 2017
Workshop: Splicing analysis with MAJIQ/VOILA - Part 3- May 2017
MAJIQ's splicing analysis for RNA-Seq
Matthew Gazzara, MAJIQ, RNA Society 2016, Kyoto
Visualization of Alternative Splicing
Yoseph Barash, VIZBI, 2011
A Window into the Lab's Research
(blog post video)
See blog post details here
Towards computational models of
the RNA world: Deriving the code for alternative splicing
Yoseph Barash, UMass, 2011
Presentations
Model based detection of alternative splicing signals
AVISPA: Web tool for splicing prediction analysis